Package index
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assignSampleExpression() - Assign Sample Expression Values to Graph Edges
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assignTP() - Assign Transition Probabilities to Graph Edges
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computeGD2Score() - Compute GD2 Score
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computeReactionActivity() - Compute Reaction Activity Values for Graph Edges
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computeReactionActivityScores() - Compute Reaction Activity Scores for Custom Dataset
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computeTransitionProbability() - Compute Transition Probabilities for Graph Edges
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GD2Viz-packageGD2Viz-pkg - GD2Viz
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GD2Viz() - GD2Viz main function
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getEdgeWeightNStepsAway() - Get Edge Weight N Steps Away
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ggplotCounts() - Plot normalized counts for a gene
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normalizeTestDataset() - Estimate Size Factors for New Dataset Based on Training Geometric Means
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plotGD2Score() - Plot GD2 Scores with Various Plot Types
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plot_ma() - MA-plot from base means and log fold changes
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range01() - Rescale Vector to Range 0-1
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resample() - Resample Function
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trainGD2model() - Train GD2 Model